Research
Basic science
Several department faculty, medical residents, postdoctoral fellows, laboratory technicians and students are pursing basic science research aimed to discover and identify basic biological mechanisms that underlie pediatric health and disease. These studies are supported by federally funded NIH grants, industry awards and private funding.
Our research laboratories include approximately 8,868 square feet of basic research space across the VCU Medical Center where researchers have access to state-of-the-art equipment and core facilities. Many laboratories are located in close proximity to faculty in other departments, fostering multidisciplinary collaborations and a supportive environment for research growth and training.
Faculty research laboratories
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Research interests: Herpesvirus DNA maturation Alkaline nuclease. While genetic studies suggest this protein is critically important for HCMV replication, its function remains a mystery. Through in silico modeling, mutagenesis and recombinant protein expression, we have identified critical amino acids required for enzymatic activity. Current efforts are focused on insertion of these mutations into the viral genome to evaluate their impact on viral replication and in silico compound library screening to identify candidate inhibitors. Novel approaches to HCMV vaccines Antibodies that neutralize epithelial entry. The ability to elicit potent neutralizing antibody responses may be critical for a successful HCMV vaccine. We recently showed that two experimental vaccines, the Towne live attenuated vaccine and the subunit gB/MF59 vaccine, perform poorly, compared to natural infection, with respect to inducing neutralizing antibodies that block epithelial cell entry. Evidence suggests that epitopes crucial for inducing such activity lie within the gH/gL/UL128-131 complex. Current studies are focused on characterizing humoral responses to this complex and identifying vaccine strategies to induce them. Strategies of interest include DNA vaccines, subunit proteins, peptides, and live attenuated, disabled or inactivated whole virus-based approaches. |
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Recent publications: Sauer, A., J. B. Wang, G. Hahn., and M. A. McVoy. 2010. A Human Cytomegalovirus Deleted of Internal Repeats Replicates with Near Wild Type Efficiency but Fails to Undergo Genome Isomerization. Virology, 401:90-5. View moreSaccoccio, F., A. Sauer, X. Cui, A. Armstrong, E. E. Habib, D. Johnson, B. Ryckman, A. Klingelhutz, S. P. Adler, and M. A. McVoy. 2011. Peptides from Cytomegalovirus UL130 and UL131 Proteins induce high titer antibodies that block viral Entry into Mucosal Epithelial Cells. Vaccine, 29:2705-11. PMID: 21310190 Olejniczak, Megan J., K. Y. Choi, M. A. McVoy, X. Cui and M. R. Schleiss. 2011. Intravaginal cytomegalovirus (CMV) challenge elicits maternal viremia and results in congenital transmission in a guinea pig model. Virology Journal, 8:89. PMID: 21371319 Wang, J. B. and M. A. McVoy. 2011. A 128-bp sequence containing pac1 and a presumed cryptic pac2 includes the cis elements sufficient to mediate efficient genome maturation of human cytomegalovirus. Journal of Virology, 85:4432-9. PMID: 21345955 Saccoccio, F. M., M. K. Gallagher, S. P. Adler, and M. A. McVoy. 2011. Neutralizing Activity of Saliva against Cytomegalovirus. Clinical and Vaccine Immunology, 18:1536-1542. Kuchta, A. L., H. Parikh, Y. Zhu, G. E. Kellogg, D. S. Parris and M. A. McVoy. 2011. Structural Modeling and Mutagenesis of Human Cytomegalovirus UL98 Alkaline Nuclease., J. Gen. Virology, in press. Cui, X., S. P. Adler, A. Davison, L. Smith, E. Habib, and M. A. McVoy. 2012. Bacterial Artificial Chromosome Clones of Viruses Comprising the Towne Cytomegalovirus Vaccine. Journal of Biomedicine and Biotechnology, in press. |
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Recent publications: Prostaglandin E₂ mediates spontaneous rhythmic contraction in rabbit detrusor muscle. Klausner AP, Johnson CM, Stike AB, Speich JE, Sabarwal V, Miner AS, Cleary M, Koo HP, Ratz PH. Can J Urol. 2011 Apr;18(2):5608-14. PMID: 21504648 View moreActive tension adaptation at a shortened arterial muscle length: inhibition by cytochalasin-D. Bednarek ML, Speich JE, Miner AS, Ratz PH. Am J Physiol Heart Circ Physiol. 2011 Apr;300(4):H1166-73. Epub 2011 Jan 14. PMID: 21239639 ROK controls urethral tone, but by what mechanism? Ratz PH. Am J Physiol Renal Physiol. 2011 Jan;300(1):F71-2. Epub 2010 Oct 20. No abstract available. PMID: 20962113 Failure of Bay K 8644 to induce RhoA kinase-dependent calcium sensitization in rabbit blood vessels. Alvarez SM, Miner AS, Browne BM, Ratz PH. Br J Pharmacol. 2010 Jul;160(6):1326-37. PMID: 20590624 COX Inhibitors and Overactive Bladder: The Potential for Future Therapy. Ratz PH, Speich JE and Klausner AP. Curr Bladder Dysfunct Rep. 2010 5:4-12 Length adaptation of the passive-to-active tension ratio in rabbit detrusor. Almasri AM, Ratz PH, Speich JE. Ann Biomed Eng. 2010 Aug;38(8):2594-605. Epub 2010 Apr 13. PMID: 20387122 Evidence that actomyosin cross bridges contribute to “passive” tension in detrusor smooth muscle. Ratz PH, Speich JE. Am J Physiol Renal Physiol. 2010 Jun;298(6):F1424-35. Epub 2010 Apr 7. PMID: 20375119 Rhythmic contraction generates adjustable passive stiffness in rabbit detrusor. Almasri AM, Ratz PH, Bhatia H, Klausner AP, Speich JE. J Appl Physiol. 2010 Mar;108(3):544-53. Epub 2010 Jan 7. PMID: 20056849 Adaptation of the length-active tension relationship in rabbit detrusor. Speich JE, Almasri AM, Bhatia H, Klausner AP, Ratz PH. Am J Physiol Renal Physiol. 2009 Oct;297(4):F1119-28. Epub 2009 Aug 12. PMID: 19675182 Calcium-independent phospholipase A2 participates in KCl-induced calcium sensitization of vascular smooth muscle. Ratz PH, Miner AS, Barbour SE. Cell Calcium. 2009 Jul;46(1):65-72. Epub 2009 May 31. PMID: 19487023 Potentiation of carbachol-induced detrusor smooth muscle contractions by beta-adrenoceptor activation. Klausner AP, Rourke KF, Miner AS, Ratz PH. Eur J Pharmacol. 2009 Mar 15;606(1-3):191-8. Epub 2009 Jan 29. PMID: 19374847 Potential for control of detrusor smooth muscle spontaneous rhythmic contraction by cyclooxygenase products released by interstitial cells of Cajal. Collins C, Klausner AP, Herrick B, Koo HP, Miner AS, Henderson SC, Ratz PH. J Cell Mol Med. 2009 Sep;13(9B):3236-50. Epub 2009 Feb 20. PMID: 19243470 |
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Research interests: Specifically, we are investigating the role of alarmins, or danger signals produced by stressed or damaged lung cells or extracellular matrix, on TLR4 mediated inflammation, and the role of prematurity in this process. We expose lung epithelial Type II cells to different alarmins and measure the activation of inflammatory-associated transcription factors and the transcription and expression of chemokines. By blocking the response with anti-TLR4 antibodies or reducing TLR4 expression via siRNA we are determining the specificity of the response. Currently, this work is being done with the alarmins HMGB1 and low-molecular weight hyaluronic acid using the mouse MLE-12 cell line. In the next phase we will use Type II cells from fetal, newborn and adult mice and replicate the alarmin exposures to investigate the role of prematurity. Clinically, there are current studies investigating the relationship between tracheal aspirate HMGB1 and low molecular-weight hyaluronic acid and pulmonary outcome in ELBW infants. We are planning to compare the TLR4-specific factors produced by hyperoxia-exposed premature vs. newborn lungs in explant culture on inflammation, and to determine the role of alarmin excitation of TLR4 receptors on lung development signals such as FGF10 and BMP4. |
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Recent publications: Altirkawi K, Rozycki HJ. Hypocalcemia Is a Common Occurrence in the First 48 Hours of Life in ELBW Infants. J Perinatal Med 2008; 36: 348-53. View moreAucott SW, Watterberg KL, Shaffer ML, Donohue PK, PROPHET Study Group. Do cortisol concentrations predict short-term outcomes in extremely low birth weight infants? Pediatr 2008; 122: 775-781. Aucott SW, Watterberg KL, Shaffer ML, Donohue PK, PROPHET study group Early cortisol values and long-term outcomes in extremely low birth weight infants. J Perinatol. 2010;30:484-8. |
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Recent publications: Priftis KN and Rubin BK. Atelectasis, middle lobe syndrome, plastic bronchitis. in Pediatric Bronchoscopy Eds. K.N. Prifits, M.B. Anthracopoulos, E. Eber, A. A. Koumbourlis, R. E. Wood. Part of the Progress in Respiratory Research Series. Karger, Basil. 2011, Vol 38. pp 149-155. View moreRubin BK. Pulmonary defense mechanisms. In ACCP/AAP Pediatric Pulmonary Medicine Board Review. 1st Edition, Chicago, 2010 pp 249-56. DOI 10.1378/ppmbr.1st 249. Rubin BK. Mucus, phlegm, and sputum in cystic fibrosis. Resp Care, 2009;54:726-32. Abanses JC, Arima S, Rubin BK. Vicks VapoRub® induces mucin secretion, decreases ciliary beat frequency, and increases tracheal transport in the ferret trachea. CHEST 2009; 135:143-148. Geller DE, Rubin BK. Respiratory care and cystic fibrosis. Respir Care. 2009;54:796-800. Bateman ED, Rennard S, Barnes PJ, Dicpinigaitis PV, Gosens R, Gross NJ, Nadel JA, Pfeifer M, Racké K, Rabe KF, Rubin BK, Welte T, Wessler I. Alternative mechanisms for tiotropium. Pulm Pharmacol Ther. 2009;22:533-42. Schechter MS, McColley SA, Silva S, Haselkorn T, Konstan MW, Wagener JS; Investigators and Coordinators of the Epidemiologic Study of Cystic Fibrosis; North American Scientific Advisory Group for ESCF. Association of socioeconomic status with the use of chronic therapies and healthcare utilization in children with cystic fibrosis. J Pediatr. 2009;155:634-9.e1-4. Kanoh S, Rubin BK. Macrolides as immunomodulatory medications. Mechanisms of action and clinical applications. Clinical Microbiol Rev 2010;23:590-615. John G, Yildirim AO, Rubin BK, Gruenert DC, Henke MO. LR-4 mediated innate immunity is reduced in cystic fibrosis airway cells. Am J Resp Cell Molec Biol. 2010;42:424-31. Schmidt HJ, Bhandari V, Bhandari A, Davies J, Marshall BC, Praud J-P, Zar HJ, Rubin BK. Think Tank Review: The future in paediatric respirology. Respirology 2010; 15:733-41. Mujica-Lopez K, Pearce MA, Narron KA, Perez J, Rubin BK. In vitro evaluation of endotracheal tubes with intrinsic suction. CHEST 2010; 138:863-69. Rubin BK. Mucus and mucins. Otolaryngol Clin North Am. 2010;43:27-34. Rubin BK. The role of mucus in cough research. Lung 2010;188(Supp):S69-S72. Kempainen RR, Milla C, Dunitz J, Savik K, Hazelwood A, Williams C, Rubin BK, Billings JL. Comparison of settings used for high-frequency chest-wall compression in cystic fibrosis. Respir Care. 2010;55:695-701. Suzuki T, Sakagami T, Young LR, Carey BC, Wood RE, Luisetti M, Wert SE, Rubin BK, Kevill K, Chalk C, Whitsett JA, Stevens C, Nogee LM, Campo I, Trapnell BC. Hereditary pulmonary alveolar proteinosis: pathogenesis, presentation, diagnosis, and therapy. Am J Resp Crit Care Med 2010;182:1292-304. Rubin BK. The 36th Annual Donald Egan Memorial Lecture. Air and soul: the science and application of aerosol therapy. Respir Care. 2010;55:911-21. Deng J, Zheng Y, Li C, Ma Z, Wang H, Rubin BK. Plastic bronchitis in three children associated with 2009 influenza A(H1N1) virus infection. CHEST 2010;138:1486-88. Kanoh S, Tanabe T, Rubin BK. Dapsone inhibits IL-8 secretion from human bronchial epithelial cells stimulated with LPS and resolves airway inflammation in the ferret. CHEST 2011 (in press). Kline JM, Woods CR, Ervin SE, Rubin BK, Kirse DJ. Surveillance tracheal aspirate cultures do not reliably predict bacteria cultured at the time of an acute respiratory infection in children with tracheostomy tubes. CHEST 2011 (in press). Christiaanse MC, Mabe B, Russell G, Simeone TL, Fortunato J, Rubin B. Neuromuscular electrical stimulation is no more effective than usual care for the treatment of primary dysphagia in children. Pediatric Pulmonol 2011;46:559-65. Rubin BK, Dhand R, Ruppel GL, Branson RD, Hess DR. Respiratory Care Year in Review 2010: Part 1. Asthma, COPD, Pulmonary function testing, Ventilator-associated pneumonia. Resp Care 2011;56:488-502. Rubin BK, Pohanka V. Beyond the guidelines: Fatal and near-fatal asthma. Paed Resp Rev 2011 (in press). Tanabe T, Kanoh S, Tsushima K, Yamazaki Y, Kubo K, Rubin BK. Clarithromycin inhibits interleukin-13-induced goblet cell hyperplasia in human airway cells. Am J Respir Cell Mol Biol. 2011 (in press). John G, Chillappagari S, Rubin BK, Gruenert DC, Henke MO. Reduced surface toll-like receptor-4 expression and absent interferon-γ-inducible protein-10 induction in cystic fibrosis airway cells. Exp Lung Res. 2011;37:319-26. Rubin BK. Pediatric aerosol therapy: New devices and new drugs. Resp Care 2011;56:1411-23. Register, KB, Sukumar N, Palavecino EL, Rubin, BK, Deora R. Bordetella bronchiseptica in a pediatric cystic fibrosis patient: Possible transmission from a household cat. Pediatr Pulmonol 2012 (in press) Robinson P, Schechter MS, Sly PD, Winfield K, Smith J, Brennan S, Shinkai M, Henke MO, Rubin BK. Clarithromycin therapy for patients with cystic fibrosis: a randomized controlled trial. Pediatr Puolmonol 2012 (in press). Kanoh S, Tanabe T, Rubin BK. IL-13-induced MUC5AC production and goblet cell differentiation is steroid resistant in human airway cells. Clin Exp Allergy 2012 (in press). Tanabe T, Kanoh S, Moskowitz WB, Rubin BK. TGF-β from cardiomyoblasts induces squamous metaplasia in human airway cells. Chest 2012. Seagrave JC, Albrecht H, Park YS, Rubin BK, Solomon G, Chul K. Effect of guaifenesin on mucin production, rheology, and mucociliary transport in differentiated human airway epithelial cells, Exp Lung Res 2012 (in press). |
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Research interests: Our major contributions include: 1) the determination that proteases produced by human skin mast cells degrade endogenous as well as recombinant cytokines; 2) human skin derived mast cells express functional FcγRIIa, but not FcγRIIb (our data challenge the current dogma that immunotherapy works through the induction of IgG antibody, which binds to FcγRIIb and transduces inhibitory signals to cells upon allergen exposure); 3) TGF-β regulates mast cell function through inhibiting its de novo expression of kit. Currently, we are studying the mechanism of desensitization by using both in vitro and in vivo models. Our in vitro model uses human skin derived mast cells which are sensitized to NP-IgE and then desensitized with NP-BSA. On the other hand, penicillin allergic patients are recruited to undergo desensitization. In addition to monitoring their hypersensitivity status before and after desensitization, basophils are isolated and tested ex vivo for their ability to respond to different stimuli. This research project will help to answer critical questions such as the duration of desensitization, the status of cross-desensitization, and the underlying cellular and molecular mechanism of drug desensitization. |
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